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protein-inverse-folding

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This repository contains three datasets (CATH-4.2, TS50, and TS500), preprocessed to be directly usable with GB.ProteinIF-16B.

Acknowledgement

  1. CATH-4.2 was prepared by: Ingraham, John, Vikas Garg, Regina Barzilay, and Tommi Jaakkola. "Generative models for graph-based protein design." Advances in neural information processing systems 32 (2019).
  2. TS50 and TS500 were prepared by: Li, Zhixiu, Yuedong Yang, Eshel Faraggi, Jian Zhan, and Yaoqi Zhou. "Direct prediction of profiles of sequences compatible with a protein structure by neural networks with fragment‐based local and energy‐based nonlocal profiles." Proteins: Structure, Function, and Bioinformatics 82, no. 10 (2014): 2565-2573.
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