| --- |
| language: rna |
| tags: |
| - Biology |
| - RNA |
| license: |
| - agpl-3.0 |
| size_categories: |
| - 10M<n<100M |
| source_datasets: |
| - multimolecule/5srrnadb |
| - multimolecule/crw |
| - multimolecule/dictybase |
| - multimolecule/ena |
| - multimolecule/ensembl |
| - multimolecule/ensembl_fungi |
| - multimolecule/ensembl_gencode |
| - multimolecule/ensembl_metazoa |
| - multimolecule/ensembl_plants |
| - multimolecule/ensembl_protists |
| - multimolecule/evlncrnas |
| - multimolecule/expression_atlas |
| - multimolecule/flybase |
| - multimolecule/genecards |
| - multimolecule/greengenes |
| - multimolecule/gtrnadb |
| - multimolecule/hgnc |
| - multimolecule/intact |
| - multimolecule/lncbase |
| - multimolecule/lncbook |
| - multimolecule/lncipedia |
| - multimolecule/lncrnadb |
| - multimolecule/malacards |
| - multimolecule/mgi |
| - multimolecule/mgnify |
| - multimolecule/mirbase |
| - multimolecule/mirgenedb |
| - multimolecule/modomics |
| - multimolecule/noncode |
| - multimolecule/pdbe |
| - multimolecule/pirbase |
| - multimolecule/plncdb |
| - multimolecule/pombase |
| - multimolecule/psicquic |
| - multimolecule/rdp |
| - multimolecule/refseq |
| - multimolecule/rfam |
| - multimolecule/rgd |
| - multimolecule/ribocentre |
| - multimolecule/ribovision |
| - multimolecule/sgd |
| - multimolecule/silva |
| - multimolecule/snodb |
| - multimolecule/snopy |
| - multimolecule/snorna_database |
| - multimolecule/srpdb |
| - multimolecule/tair |
| - multimolecule/tarbase |
| - multimolecule/tmrna_website |
| - multimolecule/wormbase |
| - multimolecule/zfin |
| - multimolecule/zwd |
| task_categories: |
| - text-generation |
| - fill-mask |
| task_ids: |
| - language-modeling |
| - masked-language-modeling |
| pretty_name: RNAcentral |
| library_name: multimolecule |
| --- |
| |
| # RNAcentral |
|
|
|  |
|
|
| RNAcentral is a free, public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of [Expert Databases](https://rnacentral.org/expert-databases) representing a broad range of organisms and RNA types. |
|
|
| The development of RNAcentral is coordinated by [European Bioinformatics Institute](http://www.ebi.ac.uk/) and is supported by [Wellcome](https://wellcome.ac.uk/). Initial funding was provided by [BBSRC](https://bbsrc.ukri.org/). |
|
|
| ## Disclaimer |
|
|
| This is an UNOFFICIAL release of the [RNAcentral](https://rnacentral.org) by The RNAcentral Consortium. |
|
|
| **The team releasing RNAcentral did not write this dataset card for this dataset so this dataset card has been written by the MultiMolecule team.** |
|
|
| ## Dataset Description |
|
|
| - **Homepage**: https://rnacentral.org |
| - **Documentation**: https://multimolecule.danling.org/datasets/rnacentral |
| - **datasets**: https://huggingface.co/datasets/multimolecule/rnacentral |
| - **Point of Contact**: [Blake Sweeney](https://www.ebi.ac.uk/people/person/blake-sweeney/) |
|
|
| ## Derived Datasets |
|
|
| - [rnacentral-modifications](https://huggingface.co/datasets/multimolecule/rnacentral-modifications): RNAcentral dataset with modifications. |
|
|
| ## License |
|
|
| This dataset is licensed under the [AGPL-3.0 License](https://www.gnu.org/licenses/agpl-3.0.html). |
|
|
| ```spdx |
| SPDX-License-Identifier: AGPL-3.0-or-later |
| ``` |
|
|
| > [!TIP] |
| > The original RNAcentral dataset is licensed under the CC0 1.0 Universal (CC0 1.0) Public Domain Dedication. |
| > This dataset is a derivative of the original RNAcentral dataset and uses a different license. |
|
|
| ## Citation |
|
|
| ```bibtex |
| @article{rnacentral2021, |
| author = {{RNAcentral Consortium}}, |
| doi = {https://doi.org/10.1093/nar/gkaa921}, |
| journal = {Nucleic Acids Research}, |
| month = jan, |
| number = {D1}, |
| pages = {D212--D220}, |
| publisher = {Oxford University Press (OUP)}, |
| title = {{RNAcentral} 2021: secondary structure integration, improved sequence search and new member databases}, |
| url = {https://academic.oup.com/nar/article/49/D1/D212/5940500}, |
| volume = 49, |
| year = 2021 |
| } |
| |
| @article{sweeney2020exploring, |
| author = {Sweeney, Blake A. and Tagmazian, Arina A. and Ribas, Carlos E. and Finn, Robert D. and Bateman, Alex and Petrov, Anton I.}, |
| doi = {https://doi.org/10.1002/cpbi.104}, |
| eprint = {https://currentprotocols.onlinelibrary.wiley.com/doi/pdf/10.1002/cpbi.104}, |
| journal = {Current Protocols in Bioinformatics}, |
| keywords = {Galaxy, ncRNA, non-coding RNA, RNAcentral, RNA-seq}, |
| number = {1}, |
| pages = {e104}, |
| title = {Exploring Non-Coding RNAs in RNAcentral}, |
| url = {https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.104}, |
| volume = 71, |
| year = 2020 |
| } |
| |
| @article{rnacentral2019, |
| author = {{The RNAcentral Consortium}}, |
| doi = {https://doi.org/10.1093/nar/gky1034}, |
| journal = {Nucleic Acids Research}, |
| month = jan, |
| number = {D1}, |
| pages = {D221--D229}, |
| publisher = {Oxford University Press (OUP)}, |
| title = {{RNAcentral}: a hub of information for non-coding {RNA} sequences}, |
| url = {https://academic.oup.com/nar/article/47/D1/D221/5160993}, |
| volume = 47, |
| year = 2019 |
| } |
| |
| @article{rnacentral2017, |
| author = {{The RNAcentral Consortium} and Petrov, Anton I and Kay, Simon J E and Kalvari, Ioanna and Howe, Kevin L and Gray, Kristian A and Bruford, Elspeth A and Kersey, Paul J and Cochrane, Guy and Finn, Robert D and Bateman, Alex and Kozomara, Ana and Griffiths-Jones, Sam and Frankish, Adam and Zwieb, Christian W and Lau, Britney Y and Williams, Kelly P and Chan, Patricia Pand Lowe, Todd M and Cannone, Jamie J and Gutell, Robin and Machnicka, Magdalena A and Bujnicki, Janusz M and Yoshihama, Maki and Kenmochi, Naoya and Chai, Benli and Cole, James R and Szymanski, Maciej and Karlowski, Wojciech M and Wood, Valerie and Huala, Eva and Berardini, Tanya Z and Zhao, Yi and Chen, Runsheng and Zhu, Weimin and Paraskevopoulou, Maria D and Vlachos, Ioannis S and Hatzigeorgiou, Artemis G and Ma, Lina and Zhang, Zhang and Puetz, Joern and Stadler, Peter F and McDonald, Daniel and Basu, Siddhartha and Fey, Petra and Engel, Stacia R and Cherry, J Michael and Volders, Pieter-Jan and Mestdagh, Pieter and Wower, Jacek and Clark, Michael B and Quek, Xiu Cheng and Dinger, Marcel E}, |
| doi = {https://doi.org/10.1093/nar/gkw1008}, |
| journal = {Nucleic Acids Research}, |
| month = jan, |
| number = {D1}, |
| pages = {D128--D134}, |
| publisher = {Oxford University Press (OUP)}, |
| title = {{RNAcentral}: a comprehensive database of non-coding {RNA} sequences}, |
| url = {https://academic.oup.com/nar/article/45/D1/D128/2333921}, |
| volume = 45, |
| year = 2017 |
| } |
| |
| @article{rnacentral2015, |
| author = {{RNAcentral Consortium} and Petrov, Anton I and Kay, Simon J E and Gibson, Richard and Kulesha, Eugene and Staines, Dan and Bruford, Elspeth A and Wright, Mathew W and Burge, Sarah and Finn, Robert D and Kersey, Paul J and Cochrane, Guy and Bateman, Alex and Griffiths-Jones, Sam and Harrow, Jennifer and Chan, Patricia P and Lowe, Todd M and Zwieb, Christian W and Wower, Jacek and Williams, Kelly P and Hudson, Corey M and Gutell, Robin and Clark, Michael B and Dinger, Marcel and Quek, Xiu Cheng and Bujnicki, Janusz M and Chua, Nam-Hai and Liu, Jun and Wang, Huan and Skogerb{\o}, Geir and Zhao, Yi and Chen, Runsheng and Zhu, Weimin and Cole, James R and Chai, Benli and Huang, Hsien-Da and Huang, His-Yuan and Cherry, J Michael and Hatzigeorgiou, Artemis and Pruitt, Kim D}, |
| doi = {https://doi.org/10.1093/nar/gku991}, |
| journal = {Nucleic Acids Research}, |
| month = jan, |
| number = {Database issue}, |
| pages = {D123--D129}, |
| title = {{RNAcentral}: an international database of {ncRNA} sequences}, |
| url = {https://academic.oup.com/nar/article/43/D1/D123/2439941}, |
| volume = 43, |
| year = 2015 |
| } |
| |
| @article{bateman2011rnacentral, |
| author = {Bateman, Alex and Agrawal, Shipra and Birney, Ewan and Bruford, Elspeth A and Bujnicki, Janusz M and Cochrane, Guy and Cole, James R and Dinger, Marcel E and Enright, Anton J and Gardner, Paul P and Gautheret, Daniel and Griffiths-Jones, Sam and Harrow, Jen and Herrero, Javier and Holmes, Ian H and Huang, Hsien-Da and Kelly, Krystyna A and Kersey, Paul and Kozomara, Ana and Lowe, Todd M and Marz, Manja and Moxon, Simon andPruitt, Kim D and Samuelsson, Tore and Stadler, Peter F and Vilella, Albert J and Vogel, Jan-Hinnerk and Williams, Kelly P and Wright, Mathew W and Zwieb, Christian}, |
| doi = {https://doi.org/10.1261/rna.2750811}, |
| journal = {RNA}, |
| month = nov, |
| number = 11, |
| pages = {1941--1946}, |
| publisher = {Cold Spring Harbor Laboratory}, |
| title = {{RNAcentral}: A vision for an international database of {RNA} sequences}, |
| url = {https://rnajournal.cshlp.org/content/17/11/1941.long}, |
| volume = 17, |
| year = 2011 |
| } |
| ``` |
|
|
