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Publish Core-4 data recipe and pinned source acquisition manifests

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+ 17. Interpretation of Sections 15 and 16.
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+ If the disclaimer of warranty and limitation of liability provided
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+ END OF TERMS AND CONDITIONS
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+ How to Apply These Terms to Your New Programs
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+
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+ If you develop a new program, and you want it to be of the greatest
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+ possible use to the public, the best way to achieve this is to make it
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+ To do so, attach the following notices to the program. It is safest
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+ This program is free software: you can redistribute it and/or modify
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+ This program is distributed in the hope that it will be useful,
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+ Also add information on how to contact you by electronic and paper mail.
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+ You should also get your employer (if you work as a programmer) or school,
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+ For more information on this, and how to apply and follow the GNU AGPL, see
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+ <https://www.gnu.org/licenses/>.
LICENSE.md ADDED
@@ -0,0 +1,23 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # Source-specific data terms
2
+
3
+ AniTrack is a recipe and index of third-party datasets, not a relicensing of
4
+ their images or labels. No combined image/annotation payload is distributed in
5
+ this initial repository. A public Hub repository does not establish unrestricted
6
+ commercial-use or redistribution rights for its referenced sources.
7
+
8
+ | Source | Recorded terms |
9
+ |---|---|
10
+ | MARS | CC-BY-NC-4.0 |
11
+ | Kumar OFA | Custom non-commercial license, included in its download manifest |
12
+ | Lightning Pose CRIM13 | CC-BY-4.0 |
13
+ | Mouse Lockbox | CC-BY-4.0 |
14
+ | SLEAP mice_hc and mice_of | Preserve dataset credits; verify applicable redistribution terms before mirroring |
15
+ | SuperAnimal TopViewMouse5K | Constituent-source terms must be checked; do not infer a blanket license from the model or software license |
16
+
17
+ Consult the publisher record and the license bundled with each archive before
18
+ use. Original attribution, notices, and license files must be retained. Any
19
+ later mirrored subset needs its own explicit rights review and provenance.
20
+
21
+ The acquisition script is licensed under AGPL-3.0-only, matching the companion
22
+ [code repository](https://github.com/Lumin-Science/LuminBench-AniTrack).
23
+ The code license grants no additional rights over referenced datasets.
README.md ADDED
@@ -0,0 +1,126 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ pretty_name: AniTrack Core-4
3
+ language:
4
+ - en
5
+ license: other
6
+ license_name: source-specific-terms
7
+ license_link: LICENSE.md
8
+ task_categories:
9
+ - keypoint-detection
10
+ - object-detection
11
+ tags:
12
+ - mouse
13
+ - rodent
14
+ - animal-pose
15
+ - core4
16
+ - multi-animal
17
+ - dataset-recipe
18
+ annotations_creators:
19
+ - expert-generated
20
+ - crowdsourced
21
+ ---
22
+
23
+ # AniTrack
24
+
25
+ The public data companion to
26
+ [LuminBench-AniTrack](https://github.com/Lumin-Science/LuminBench-AniTrack):
27
+ mouse detection and **Core-4 pose** (`nose`, `left_ear`, `right_ear`, `tail_base`).
28
+
29
+ ## What is published here?
30
+
31
+ This initial release contains **source-download manifests, semantic mappings,
32
+ an acquisition script, and the training-data recipe**. It does **not** contain
33
+ image shards, per-image labels, pretrained weights, or a ready-to-load
34
+ `datasets.load_dataset()` training table. The counts below describe the original
35
+ prepared training views, not payloads currently hosted on this Hub repository.
36
+
37
+ Upstream images and labels must be acquired from their original publishers,
38
+ under each source's terms. Public availability is not permission to relicense
39
+ or mirror every source. See [LICENSE.md](LICENSE.md).
40
+
41
+ ## Frozen recipe: Bridge-33K Rotating v2
42
+
43
+ | Partition / training view | Frames | Mouse annotations | Use |
44
+ |---|---:|---:|---|
45
+ | Pose training | 32,713 | 53,420 | Gradient updates |
46
+ | Detector training | 32,754 | 53,502 | Gradient updates |
47
+ | External validation | 2,662 | 4,801 | Checkpoint selection |
48
+ | DLC historical test | 263 | 285 boxes / 283 Core-4-evaluable mice | Final comparison only |
49
+
50
+ The union before cleaning contains 27,826 external training frames plus 5,114
51
+ TopViewMouse training frames. The latter includes 1,012 Openfield training
52
+ images; the disjoint 54 Openfield test images remain inside the frozen
53
+ 263-image historical test. Historical test images must not be used to train,
54
+ generate training pseudo-labels, select checkpoints, or tune thresholds.
55
+
56
+ ### Source families
57
+
58
+ Counts are upstream human-supervised frames across their available splits,
59
+ before the AniTrack split and cleaning operations.
60
+
61
+ | Source | Frames | Supervision / view | Terms and evidence |
62
+ |---|---:|---|---|
63
+ | [TopViewMouse5K v2](https://zenodo.org/records/13757509) | 5,114 train + 263 test | Human 27-point union; partial Core-4; mostly top view | Constituent-source terms; no single annotator-count claim |
64
+ | [MARS](https://data.caltech.edu/records/j1ww1-mdc55) | 15,000 | Two mice, seven points, top view | CC-BY-NC-4.0; five-worker median labels |
65
+ | [Kumar OFA](https://zenodo.org/records/6380163) | 8,910 | One mouse, twelve points, top view | Custom non-commercial terms; human labels, rater count unreported |
66
+ | [Lightning Pose CRIM13](https://figshare.com/articles/dataset/Lightning_Pose_dataset_CRIM13/24993384) | 5,260 labeled centers | Two mice, seven points, top view | CC-BY-4.0; five-annotator median; 21,040 neighboring frames are not human-labeled centers |
67
+ | [SLEAP mice_hc](https://docs.sleap.ai/v1.6.2/reference/datasets/#mice_hc) | 1,474 | Two mice, five points, overhead | Human labels; preserve dataset credits and verify redistribution terms |
68
+ | [SLEAP mice_of](https://docs.sleap.ai/v1.6.2/reference/datasets/) | 1,000 | One to five mice, partial Core-4, **below-floor** | Human labels; not a strict-overhead source; verify redistribution terms |
69
+ | [Mouse Lockbox](https://depositonce.tu-berlin.de/items/0d508909-ac27-46bd-9e52-17409196daeb) | 544 usable top-camera rows | One mouse, apparatus occlusions | CC-BY-4.0; human pose labels; only verified top camera used |
70
+
71
+ ### Sampling, cleaning, and limitations
72
+
73
+ MARS, Kumar and CRIM13 are capped at **1,242 frames per epoch each**, using
74
+ seeded rotating windows. Smaller sources retain their eligible frames. Pose
75
+ training rotates the selected target in multi-mouse images; detector training
76
+ retains all valid boxes in a selected frame. The original pose virtual epoch
77
+ contains 11,070 crops, with 600 epochs and global batch 64 (103,800 updates).
78
+
79
+ Human partial keypoints are masked, never filled with teacher predictions.
80
+ Near-complete overlap is excluded from the isolated pose-crop view but retained
81
+ for detector supervision when boxes remain useful. Empty records and exact
82
+ duplicate annotations are removed. The original detector loader additionally
83
+ skipped seven invalid normalized-label records; do not silently repair the
84
+ published recipe and still call it an exact reproduction.
85
+
86
+ Published video/group splits are preserved where available. MARS lacks released
87
+ session identifiers; its deterministic frame-hash split is **not proof of
88
+ session-independent generalization**. TopViewMouse does not expose reliable
89
+ session IDs either. SLEAP mice_of is a below-floor domain and should be reported
90
+ separately in source-level evaluations.
91
+
92
+ ## Acquire the original archives
93
+
94
+ Clone this small metadata repository **on the machine where you intend to store
95
+ the data**:
96
+
97
+ ```bash
98
+ git clone https://huggingface.co/datasets/LuminScience/AniTrack
99
+ cd AniTrack
100
+ python3 download_sources.py --list
101
+ # Only after reviewing the upstream terms; downloads are explicit:
102
+ python3 download_sources.py --download --accept-source-terms \
103
+ --output-root /your/data/raw
104
+ ```
105
+
106
+ The script uses only Python's standard library, validates pinned publisher MD5
107
+ checksums (and sizes where available), and does not extract or alter the source
108
+ archives. Existing valid files are reused; invalid existing files cause a hard
109
+ failure. Use `--sources mars_topview_pose` to acquire a selected source. No
110
+ training split is created by this acquisition step.
111
+
112
+ The `manifests/` files preserve native layouts and Core-4 mappings. The external
113
+ preparation configuration records the split and missing-label policies;
114
+ `recipe.json` records the combined training contract. Conversion, split audits,
115
+ and pose/detector training live in the companion code repository. Pin revisions
116
+ of both repositories for any experiment. The historical external staging
117
+ manifest filename containing `gated` refers to two now-directly-downloadable
118
+ sources, not a Hub access gate.
119
+
120
+ ## Scope
121
+
122
+ This is a frame-level detection/pose resource, not newly annotated ground truth
123
+ for persistent tracking identities. No new animal experiments were conducted
124
+ to produce this collection. Cite the original datasets and respect their animal
125
+ research, attribution, and usage requirements. Candidate datasets awaiting
126
+ access or semantic review are not counted in this recipe.
download_sources.py ADDED
@@ -0,0 +1,124 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ #!/usr/bin/env python3
2
+ # SPDX-License-Identifier: AGPL-3.0-only
3
+ """Acquire source-native AniTrack archives. No downloads without --download."""
4
+
5
+ from __future__ import annotations
6
+
7
+ import argparse
8
+ import hashlib
9
+ import json
10
+ from pathlib import Path
11
+ import re
12
+ import shutil
13
+ import urllib.request
14
+
15
+
16
+ MANIFEST_NAMES = (
17
+ "topview_core4_human_sources.json",
18
+ "core4_gated_public_sources.json",
19
+ "topviewmouse_source.json",
20
+ )
21
+
22
+
23
+ def load_sources(root: Path) -> list[dict]:
24
+ sources = []
25
+ seen = set()
26
+ for name in MANIFEST_NAMES:
27
+ manifest = json.loads((root / "manifests" / name).read_text())
28
+ for source in manifest["sources"]:
29
+ source_id = source["id"]
30
+ if not re.fullmatch(r"[a-z0-9_]+", source_id) or source_id in seen:
31
+ raise ValueError(f"Unsafe or duplicate source ID: {source_id}")
32
+ seen.add(source_id)
33
+ names = set()
34
+ for spec in source["files"]:
35
+ filename = spec["name"]
36
+ if (not filename or filename in {".", ".."}
37
+ or "/" in filename or "\\" in filename or filename in names):
38
+ raise ValueError(f"Unsafe or duplicate filename: {filename}")
39
+ names.add(filename)
40
+ if not spec["url"].startswith("https://"):
41
+ raise ValueError("Only HTTPS source URLs are accepted")
42
+ if not re.fullmatch(r"[0-9a-f]{32}", spec["md5"]):
43
+ raise ValueError("Every source requires a pinned publisher MD5")
44
+ sources.append(source)
45
+ return sources
46
+
47
+
48
+ def verify(path: Path, spec: dict) -> dict:
49
+ size = path.stat().st_size
50
+ if "size" in spec and size != spec["size"]:
51
+ raise ValueError(f"Size mismatch for {path.name}: {size} != {spec['size']}")
52
+ md5 = hashlib.md5(usedforsecurity=False)
53
+ sha256 = hashlib.sha256()
54
+ with path.open("rb") as handle:
55
+ while chunk := handle.read(8 * 1024 * 1024):
56
+ md5.update(chunk)
57
+ sha256.update(chunk)
58
+ if md5.hexdigest() != spec["md5"]:
59
+ raise ValueError(f"Publisher MD5 mismatch for {path.name}; file not accepted")
60
+ return {"name": spec["name"], "bytes": size, "md5": md5.hexdigest(),
61
+ "sha256": sha256.hexdigest(), "source_url": spec["url"]}
62
+
63
+
64
+ def acquire(destination: Path, spec: dict) -> dict:
65
+ if destination.is_symlink():
66
+ raise ValueError(f"Refusing symlink destination: {destination}")
67
+ if destination.exists():
68
+ return verify(destination, spec)
69
+ # Never silently overwrite an interrupted download or unverified archive.
70
+ partial = destination.with_name(destination.name + ".partial")
71
+ with partial.open("xb") as target:
72
+ request = urllib.request.Request(spec["url"], headers={"User-Agent": "AniTrack-source-setup/1"})
73
+ with urllib.request.urlopen(request, timeout=120) as response:
74
+ if not response.url.startswith("https://"):
75
+ raise ValueError("Refusing a non-HTTPS source redirect")
76
+ shutil.copyfileobj(response, target, length=8 * 1024 * 1024)
77
+ receipt = verify(partial, spec)
78
+ partial.rename(destination)
79
+ return receipt
80
+
81
+
82
+ def main(argv: list[str] | None = None) -> None:
83
+ parser = argparse.ArgumentParser(description=__doc__)
84
+ action = parser.add_mutually_exclusive_group()
85
+ action.add_argument("--list", action="store_true", help="List sources; never download")
86
+ action.add_argument("--download", action="store_true")
87
+ parser.add_argument("--accept-source-terms", action="store_true",
88
+ help="Confirm you reviewed each publisher's applicable terms")
89
+ parser.add_argument("--sources", nargs="+", help="Selected source IDs; default all")
90
+ parser.add_argument("--output-root", type=Path)
91
+ args = parser.parse_args(argv)
92
+ sources = load_sources(Path(__file__).resolve().parent)
93
+ if args.sources:
94
+ unknown = set(args.sources) - {source["id"] for source in sources}
95
+ if unknown:
96
+ parser.error(f"Unknown sources: {sorted(unknown)}")
97
+ sources = [source for source in sources if source["id"] in args.sources]
98
+ for source in sources:
99
+ terms = source.get("license", source.get("license_note", "See publisher"))
100
+ size = sum(spec.get("size", 0) for spec in source["files"])
101
+ print(f"{source['id']}: {len(source['files'])} files; known bytes={size}; {terms}")
102
+ if not args.download:
103
+ print("Plan only. No files downloaded. Review LICENSE.md before --download.")
104
+ return
105
+ if not args.accept_source_terms or args.output_root is None:
106
+ parser.error("Downloads require --accept-source-terms and --output-root")
107
+ root = args.output_root.resolve()
108
+ root.mkdir(parents=True, exist_ok=True)
109
+ for source in sources:
110
+ destination = root / source["id"] / "archives"
111
+ if destination.is_symlink() or destination.parent.is_symlink():
112
+ raise ValueError("Refusing a symlink archive directory")
113
+ destination.mkdir(parents=True, exist_ok=True)
114
+ receipts = []
115
+ for spec in source["files"]:
116
+ print(f"Acquire and verify: {source['id']}/{spec['name']}", flush=True)
117
+ receipts.append(acquire(destination / spec["name"], spec))
118
+ (destination.parent / "acquisition.json").write_text(
119
+ json.dumps({"source": source["id"], "files": receipts}, indent=2) + "\n")
120
+ print("Verified source archives acquired. No extraction or split modification performed.")
121
+
122
+
123
+ if __name__ == "__main__":
124
+ main()
manifests/core4_gated_public_sources.json ADDED
@@ -0,0 +1,46 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "schema_version": 1,
3
+ "sources": [
4
+ {
5
+ "id": "sleap_mice_of",
6
+ "display_name": "SLEAP mice_of",
7
+ "license_note": "Public SLEAP benchmark package; research use in this project",
8
+ "files": [
9
+ {
10
+ "name": "train.pkg.slp",
11
+ "url": "https://storage.googleapis.com/sleap-data/datasets/wang_4mice_john/labels.full/random_split1/train.pkg.slp",
12
+ "size": 171619360,
13
+ "md5": "bcebb5dd4b33b38dd5ff2b9f965dabe7",
14
+ "unpack": "none"
15
+ },
16
+ {
17
+ "name": "val.pkg.slp",
18
+ "url": "https://storage.googleapis.com/sleap-data/datasets/wang_4mice_john/labels.full/random_split1/val.pkg.slp",
19
+ "size": 21597150,
20
+ "md5": "7f519b486c183d31790703e8ff80065d",
21
+ "unpack": "none"
22
+ },
23
+ {
24
+ "name": "test.pkg.slp",
25
+ "url": "https://storage.googleapis.com/sleap-data/datasets/wang_4mice_john/labels.full/random_split1/test.pkg.slp",
26
+ "size": 21582354,
27
+ "md5": "dffaa4620b7a65fd5822be4853a51187",
28
+ "unpack": "none"
29
+ }
30
+ ]
31
+ },
32
+ {
33
+ "id": "mouse_lockbox_pose",
34
+ "display_name": "Mouse Lockbox DLC training labels",
35
+ "license_note": "CC BY 4.0",
36
+ "files": [
37
+ {
38
+ "name": "DLC-training-labels.tar",
39
+ "url": "https://api-depositonce.tu-berlin.de/server/api/core/bitstreams/408325d0-4a03-4db9-96f8-7ee5f873640e/content",
40
+ "md5": "b90a07e1273311ec3c358e08a27bb092",
41
+ "unpack": "tar"
42
+ }
43
+ ]
44
+ }
45
+ ]
46
+ }
manifests/luminmouse_core4_32k_v1.json ADDED
@@ -0,0 +1,101 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "schema_version": 1,
3
+ "dataset_id": "luminmouse-core4-32k-v1",
4
+ "display_name": "LuminMouse-Core4-32K v1",
5
+ "short_name": "LM-C4-32K-v1",
6
+ "status": "source_preparation_recipe",
7
+ "redistribution": "Do not redistribute the combined image payload. Preserve and obey each source license.",
8
+ "objective": "Human-supervised mouse pose foundation pretraining with a unified four-keypoint vocabulary and explicit missing-keypoint masks.",
9
+ "core4_keypoints": [
10
+ "nose",
11
+ "left_ear",
12
+ "right_ear",
13
+ "tail_base"
14
+ ],
15
+ "nominal_totals": {
16
+ "frames": 32188,
17
+ "instances": 55872,
18
+ "valid_core4_coordinates": 219042,
19
+ "fully_complete_instances": 52456
20
+ },
21
+ "split_policy": {
22
+ "seed": 42,
23
+ "mars_topview_pose": "Deterministic 90/5/5 frame hash split; the release exposes no video/session grouping, so this split is diagnostic rather than leakage-proof.",
24
+ "kumar_ofa_pose": "Published training groups remain train; published validation groups are deterministically divided between validation and test without splitting a group.",
25
+ "lightning_pose_crim13": "Published InD videos remain train; published OOD videos are deterministically divided between validation and test without splitting a video.",
26
+ "sleap_mice_hc": "Preserve official train/validation/test package splits.",
27
+ "sleap_mice_of": "Preserve official train/validation/test package splits.",
28
+ "mouse_lockbox_top": "Use verified top camera 23499137 only; deterministically assign 12/2/2 complete video groups to train/validation/test."
29
+ },
30
+ "image_materialization": {
31
+ "format": "JPEG",
32
+ "quality": 95,
33
+ "subsampling": 0,
34
+ "reason": "Create a portable training image view while preserving original source archives."
35
+ },
36
+ "bbox_policy": {
37
+ "method": "tight box over all finite released mouse landmarks",
38
+ "scale": 1.25,
39
+ "fallback": "full frame when fewer than two finite native mouse landmarks exist"
40
+ },
41
+ "openfield_leakage_gate": {
42
+ "held_out_dataset": "DLC-Openfield openfield-Pranav-2018-08-20",
43
+ "expected_images": 1066,
44
+ "abort_on_exact_decoded_pixel_match": true,
45
+ "dhash_hamming_diagnostic_threshold": 4
46
+ },
47
+ "sources": [
48
+ {
49
+ "id": "mars_topview_pose",
50
+ "license": "CC-BY-NC-4.0",
51
+ "view": "top",
52
+ "frames": 15000,
53
+ "instances": 30000,
54
+ "valid_core4_coordinates": 120000
55
+ },
56
+ {
57
+ "id": "kumar_ofa_pose",
58
+ "license": "custom non-commercial",
59
+ "view": "top",
60
+ "frames": 8910,
61
+ "instances": 8910,
62
+ "valid_core4_coordinates": 35640
63
+ },
64
+ {
65
+ "id": "lightning_pose_crim13",
66
+ "license": "CC-BY-4.0",
67
+ "view": "top",
68
+ "frames": 5260,
69
+ "instances": 10520,
70
+ "valid_core4_coordinates": 42080
71
+ },
72
+ {
73
+ "id": "sleap_mice_hc",
74
+ "license": "dataset credit/citation terms; verify before redistribution",
75
+ "view": "top",
76
+ "frames": 1474,
77
+ "instances": 2948,
78
+ "valid_core4_coordinates": 11264,
79
+ "fully_complete_instances": 2491
80
+ },
81
+ {
82
+ "id": "sleap_mice_of",
83
+ "license": "public SLEAP benchmark; verify redistribution terms",
84
+ "view": "below_floor",
85
+ "frames": 1000,
86
+ "instances": 2950,
87
+ "valid_core4_coordinates": 8169
88
+ },
89
+ {
90
+ "id": "mouse_lockbox_top",
91
+ "license": "CC-BY-4.0",
92
+ "view": "top",
93
+ "camera_id": "23499137",
94
+ "annotated_rows": 562,
95
+ "frames": 544,
96
+ "instances": 544,
97
+ "excluded_zero_core4_rows": 18,
98
+ "valid_core4_coordinates": 1889
99
+ }
100
+ ]
101
+ }
manifests/topview_core4_human_sources.json ADDED
@@ -0,0 +1,197 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "schema_version": 1,
3
+ "description": "Pinned public, human-labeled, strict top-view rodent sources with exact Core-4 semantics. Openfield and the existing TopViewMouse release are intentionally excluded.",
4
+ "core4_keypoints": [
5
+ "nose",
6
+ "left_ear",
7
+ "right_ear",
8
+ "tail_base"
9
+ ],
10
+ "nominal_totals": {
11
+ "frames": 30644,
12
+ "physical_staged_frames": 51684,
13
+ "instances": 52378,
14
+ "core4_coordinates": 209512,
15
+ "valid_core4_coordinates": 208984,
16
+ "fully_complete_instances": 51921
17
+ },
18
+ "sources": [
19
+ {
20
+ "id": "mars_topview_pose",
21
+ "display_name": "MARS top-view pose annotations",
22
+ "record_url": "https://data.caltech.edu/records/j1ww1-mdc55",
23
+ "license": "CC-BY-NC-4.0",
24
+ "nominal_frames": 15000,
25
+ "nominal_instances": 30000,
26
+ "native_keypoints": [
27
+ "nose_tip",
28
+ "left_ear",
29
+ "right_ear",
30
+ "neck",
31
+ "left_side_body",
32
+ "right_side_body",
33
+ "tail_base"
34
+ ],
35
+ "core4_mapping": {
36
+ "nose_tip": "nose",
37
+ "left_ear": "left_ear",
38
+ "right_ear": "right_ear",
39
+ "tail_base": "tail_base"
40
+ },
41
+ "files": [
42
+ {
43
+ "name": "raw_images_top.zip",
44
+ "url": "https://data.caltech.edu/api/records/j1ww1-mdc55/files/raw_images_top.zip/content",
45
+ "size": 1458709091,
46
+ "md5": "77aa6739caf01c592674dff1e09e8968",
47
+ "unpack": "zip"
48
+ },
49
+ {
50
+ "name": "MARS_keypoints_top.json",
51
+ "url": "https://data.caltech.edu/api/records/j1ww1-mdc55/files/MARS_keypoints_top.json/content",
52
+ "size": 21620253,
53
+ "md5": "c42cc0a9f342e07ac9ed7e269cb590dd",
54
+ "unpack": "none"
55
+ }
56
+ ]
57
+ },
58
+ {
59
+ "id": "kumar_ofa_pose",
60
+ "display_name": "Kumar Lab open-field analysis pose training set",
61
+ "record_url": "https://zenodo.org/records/6380163",
62
+ "license": "custom non-commercial (see bundled LICENSE)",
63
+ "nominal_frames": 8910,
64
+ "nominal_instances": 8910,
65
+ "published_container_splits": {
66
+ "training_frames": 7910,
67
+ "validation_frames": 1000,
68
+ "note": "The frequently reported separate 1,000-image test split is not present in merged_pose_annos_2019-06-26.h5."
69
+ },
70
+ "native_keypoints": [
71
+ "nose",
72
+ "left_ear",
73
+ "right_ear",
74
+ "base_neck",
75
+ "left_front_paw",
76
+ "right_front_paw",
77
+ "center_spine",
78
+ "left_rear_paw",
79
+ "right_rear_paw",
80
+ "base_tail",
81
+ "mid_tail",
82
+ "tip_tail"
83
+ ],
84
+ "core4_mapping": {
85
+ "nose": "nose",
86
+ "left_ear": "left_ear",
87
+ "right_ear": "right_ear",
88
+ "base_tail": "tail_base"
89
+ },
90
+ "files": [
91
+ {
92
+ "name": "merged_pose_annos_2019-06-26.h5.gz",
93
+ "url": "https://zenodo.org/api/records/6380163/files/merged_pose_annos_2019-06-26.h5.gz/content",
94
+ "size": 427596974,
95
+ "md5": "544e65de7a4dcedf61525985248e048b",
96
+ "unpack": "gzip"
97
+ },
98
+ {
99
+ "name": "LICENSE",
100
+ "url": "https://zenodo.org/api/records/6380163/files/LICENSE/content",
101
+ "size": 18588,
102
+ "md5": "b052e32bcc617ace5f4196aca4334cfa",
103
+ "unpack": "none"
104
+ },
105
+ {
106
+ "name": "pose-est-conf.yaml",
107
+ "url": "https://zenodo.org/api/records/6380163/files/pose-est-conf.yaml/content",
108
+ "size": 2419,
109
+ "md5": "221ad9d22e5a38af4a2252985e77b665",
110
+ "unpack": "none"
111
+ }
112
+ ]
113
+ },
114
+ {
115
+ "id": "lightning_pose_crim13",
116
+ "display_name": "Lightning Pose CRIM13",
117
+ "record_url": "https://figshare.com/articles/dataset/Lightning_Pose_dataset_CRIM13/24993384",
118
+ "license": "CC-BY-4.0",
119
+ "nominal_frames": 5260,
120
+ "physical_image_frames": 26300,
121
+ "temporal_context": {
122
+ "frames_per_labeled_center": 5,
123
+ "unlabeled_neighbor_frames": 21040,
124
+ "note": "Each of the 5,260 label-table rows has a five-frame image window; only the center frame carries human keypoints."
125
+ },
126
+ "nominal_instances": 10520,
127
+ "native_keypoints": [
128
+ "nose",
129
+ "left_ear",
130
+ "right_ear",
131
+ "top_of_neck",
132
+ "left_rear_knee",
133
+ "right_rear_knee",
134
+ "tail_base"
135
+ ],
136
+ "core4_mapping": {
137
+ "nose": "nose",
138
+ "left_ear": "left_ear",
139
+ "right_ear": "right_ear",
140
+ "tail_base": "tail_base"
141
+ },
142
+ "files": [
143
+ {
144
+ "name": "crim13.zip",
145
+ "url": "https://ndownloader.figshare.com/files/44031672",
146
+ "size": 4771693772,
147
+ "md5": "bdd3afa69c7a387e22070af03bd1ea6f",
148
+ "unpack": "zip"
149
+ }
150
+ ]
151
+ },
152
+ {
153
+ "id": "sleap_mice_hc",
154
+ "display_name": "SLEAP mice_hc",
155
+ "record_url": "https://docs.sleap.ai/v1.6.2/reference/datasets/#mice_hc",
156
+ "license": "dataset credit/citation terms; verify before redistribution",
157
+ "nominal_frames": 1474,
158
+ "nominal_instances": 2948,
159
+ "native_keypoints": [
160
+ "snout",
161
+ "earL",
162
+ "earR",
163
+ "tail_base",
164
+ "tail_tip"
165
+ ],
166
+ "core4_mapping": {
167
+ "snout": "nose",
168
+ "earL": "left_ear",
169
+ "earR": "right_ear",
170
+ "tail_base": "tail_base"
171
+ },
172
+ "files": [
173
+ {
174
+ "name": "train.pkg.slp",
175
+ "url": "https://storage.googleapis.com/sleap-data/datasets/eleni_mice/random_split1/train.pkg.slp",
176
+ "size": 696486384,
177
+ "md5": "92b7a73b704bb6140c4f08dc8889c75f",
178
+ "unpack": "none"
179
+ },
180
+ {
181
+ "name": "val.pkg.slp",
182
+ "url": "https://storage.googleapis.com/sleap-data/datasets/eleni_mice/random_split1/val.pkg.slp",
183
+ "size": 87734418,
184
+ "md5": "eade94312d4d23e685ab2467c1115bdd",
185
+ "unpack": "none"
186
+ },
187
+ {
188
+ "name": "test.pkg.slp",
189
+ "url": "https://storage.googleapis.com/sleap-data/datasets/eleni_mice/random_split1/test.pkg.slp",
190
+ "size": 87787146,
191
+ "md5": "27392fddd4fb3e902c8032230d48e6f4",
192
+ "unpack": "none"
193
+ }
194
+ ]
195
+ }
196
+ ]
197
+ }
manifests/topviewmouse_source.json ADDED
@@ -0,0 +1,16 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "schema_version": 1,
3
+ "sources": [{
4
+ "id": "superanimal_topviewmouse5k",
5
+ "display_name": "SuperAnimal-TopViewMouse-5K v2",
6
+ "record_url": "https://zenodo.org/records/13757509",
7
+ "license_note": "Constituent-source terms; verify before redistribution",
8
+ "files": [{
9
+ "name": "TopViewMouse5K_20240913.tar.gz",
10
+ "url": "https://zenodo.org/api/records/13757509/files/TopViewMouse5K_20240913.tar.gz/content",
11
+ "size": 1433344899,
12
+ "md5": "ed2f8304d0a5d70a7119ae9eeb3e4ed8",
13
+ "unpack": "tar.gz"
14
+ }]
15
+ }]
16
+ }
recipe.json ADDED
@@ -0,0 +1,41 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "schema_version": 1,
3
+ "dataset_id": "luminmouse-core4-bridge33k-rotating-v2",
4
+ "publication_kind": "source_manifests_and_recipe_only",
5
+ "image_payload_hosted": false,
6
+ "per_image_annotations_hosted": false,
7
+ "seed": 42,
8
+ "keypoints": ["nose", "left_ear", "right_ear", "tail_base"],
9
+ "bbox_format": "COCO xywh in original image pixels",
10
+ "missing_keypoints": "masked; never teacher-filled",
11
+ "human_pose_supervision_only": true,
12
+ "raw_training_input": {
13
+ "external": {"images": 27826, "instances": 48073},
14
+ "topviewmouse": {"images": 5114, "instances": 5452}
15
+ },
16
+ "prepared_views": {
17
+ "pose_train": {"images": 32713, "instances": 53420},
18
+ "detector_train": {"images": 32754, "instances": 53502},
19
+ "external_validation": {"images": 2662, "instances": 4801},
20
+ "historical_test": {"images": 263, "bbox_instances": 285, "core4_instances": 283}
21
+ },
22
+ "openfield": {"train_images": 1012, "historical_test_images": 54},
23
+ "sampling": {
24
+ "strategy": "seeded cyclic windows; one mouse per pose frame rotates by epoch",
25
+ "per_source_frame_caps": {"mars_topview_pose": 1242, "kumar_ofa_pose": 1242, "lightning_pose_crim13": 1242},
26
+ "uncapped_sources": "all eligible frames per epoch",
27
+ "pose_crops_per_epoch": 11070,
28
+ "detector_frames_per_epoch": 11070,
29
+ "detector_frames_with_ddp_padding": 11072
30
+ },
31
+ "training_exposure": {
32
+ "pose": {"epochs": 600, "global_batch": 64, "world_size": 8, "local_batch": 8, "updates": 103800},
33
+ "detector": {"formal_time_hours": 12.5, "completed_epochs": 714, "global_batch": 64, "image_size": 640}
34
+ },
35
+ "historical_loader_caveat": "Seven invalid normalized detector-label records were skipped in the original run; prepared-manifest totals are not loaded-record totals.",
36
+ "split_limitations": [
37
+ "MARS has no released session IDs; deterministic frame-hash splitting is diagnostic, not session-disjoint evidence.",
38
+ "TopViewMouse has source-family labels but no reliable released session IDs.",
39
+ "Historical test must not enter gradients, training pseudo-labels, checkpoint selection, or threshold tuning."
40
+ ]
41
+ }